Refereed Journal Articles

[6] Andrew Sundstrom, Dafna Bar-Sagi, Bud Mishra. "Simulating heterogeneous tumor cell populations". PLoS ONE, 11(12): e0168984 (28 Dec 2016). [doi: 10.1371/journal.pone.0168984] [pmid: 28030620] [article: pdf] [code]

[5] Andrew Sundstrom, Elda Grabocka, Dafna Bar-Sagi, Bud Mishra. "Histological image processing features induce a quantitative characterization of chronic tumor hypoxia". PLoS ONE, 11(4): e0153623 (19 Apr 2016). [doi: 10.1371/journal.pone.0153623] [pmid: 27093539] [article: pdf] [code] [data]

[4] Justin Jee, Andrew Sundstrom, Steven E. Massey, Bud Mishra. "What can information-asymmetric games tell us about the context of Crick's 'frozen accident'?" Journal of the Royal Society Interface, 10(88):20130614 (6 Nov 2013). Published online before print 28 Aug 2013. [doi: 10.1098/rsif.2013.0614] [pmid: 23985735] [article: pdf] [supplementary material #1: pdf], [supplementary material #2: pdf], [supplementary material #3: pdf], [supplementary material #4: pdf], [supplementary material #5: pdf]

[3] Andrew Sundstrom, Silvio Cirrone, Salvatore Paxia, Carlin Hsueh, Rachel Kjolby, James K. Gimzewski, Jason Reed, Bud Mishra. "Image analysis and length estimation of biomolecules using AFM". IEEE Transactions on Information Technology in Biomedicine, 16(6):1200-1207 (Nov 2012). Published online before print 29 Jun 2012. [doi: 10.1109/TITB.2012.2206819] [pmid: 22759526] [article: pdf] [supplementary material: pdf]

[2] Jason Reed, Carlin Hsueh, Miu-Ling Lam, Rachel Kjolby, Andrew Sundstrom, Bud Mishra, and James K. Gimzewski. "Identifying individual DNA species in a complex mixture by precisely measuring the spacing between nicking restriction enzymes with atomic force microscope". Journal of the Royal Society Interface, 9(74):2341-2350 (7 Sep 2012). Published online before print 28 March 2012. [doi: 10.1098/rsif.2012.0024] [pmid: 22456455] [article: pdf] [supplementary material: doc]

[1] Hao Wu, Kevin J. Kim, Kshama Mehta, Salvatore Paxia, Andrew Sundstrom, Thomas Anantharaman, Ali I. Kuraishy, Tri Doan, Jayati Ghosh, April D. Pyle, Amander Clark, William Lowry, Guoping Fan, Tim Baxter, Bud Mishra, Yi Sun, Michael A. Teitell. "Copy number variant analysis of human embryonic stem cells". Stem Cells, 26(6):1484-1489 (Jun 2008). Published online before print 27 Mar 2008. [doi: 10.1634/stemcells.2007-0993] [pmid: 18369100] [article: pdf] [supplementary material #1: pdf] [supplementary material #2: pdf]

 

Ph.D. Dissertation

"Toward a computational solution to the inverse problem of how hypoxia arises in metabolically heterogeneous cancer cell populations". Accepted 23 Sep 2013 (readers: Profs. Bud MishraDafna Bar-Sagi, and Leslie Greengard; auditors: Profs. Ravi Iyengar and Ernest Davis). [ProQuest] [pdf]

 

Masters Thesis

"Measuring biomolecules: an image processing and length estimation pipeline using atomic force microscopy to measure DNA and RNA with high precision". Accepted 22 Sep 2008 (readers: Profs. Bud Mishra and Davi Geiger). [Stockholm] [pdf]

 

Research Contributions

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